The T32 Program includes formal training in Clinical Research, Biostatistical Methods, and Grant Writing, which is a critical part for the foundation of a successful research career. The training will include the following topics:

  • How to create a sound clinical research protocol.
  • Recognize and resolve ethical dilemmas in clinical research.
  • Become familiar with sources of funding for clinical research.
  • Describe the roles of descriptive versus inferential statistics.
  • Identify characteristics of the problem to help choose the appropriate analytic technique.
  • Describe techniques appropriate for handling a single outcome variable and multiple predictors.
  • Outline data limitations and their consequences.
  • Identify the elements of a good grant proposal.
  • Create a grant proposal outline and write and edit a first draft.
  • Produce a realistic budget and support it with a strong budget justification.
  • Follow agency instructions.
  • Write a grant proposal for an intended audience that demonstrates the mechanics and psychology of good expository writing.
  • Describe the review process and the psychology of reviewers.

All trainees are required to take the Summer Clinical Research Workshop run by the UCSF Department of Epidemiology and Biostatistics located at UCSF’s China Basin Campus. The Summer Clinical Research Workshop includes three courses that are the starting point for all clinical research training at UCSF. The Workshop introduces the language of clinical research and provides detailed instruction in the most integral component of a clinical investigation; a written protocol that is scientifically sound, ethically appropriate, and competitive for funding. The course aims to train clinical scientists in the skills needed to:

The Workshop provides an introduction to the world of clinical research that is structured around individualized written products that trainees will find useful; a 5-page protocol for an actual study, a resolution of ethical issues in that study, and a career plan. For individuals who will participate in clinical research in a supportive capacity, the Workshop alone is sufficient training. For others desiring to be independent investigators, the Workshop serves as introductory material for the more advanced ATCR Certificate and Master's Degree in Clinical Research Program (note: UCSF faculty, fellows, students may take most TICR courseson an individual basis).

All trainees are required to take a course in advanced grant writing. The recommended course is the Radiological Society of North America (RSNA) Advanced Course in Grant Writing. The purpose of this course is to assist participants to prepare and submit a quality grant application to the NIH, NSF, or other equivalent institution by the October NIH deadline. The Advanced Course consists of 4 multi-day sessions spanning a 9-month period, held at RSNA Headquarters in Oak Brook, IL. Course sessions are generally held in September, October, April, and June. The eligibility of program trainees to undertake this course has been confirmed with the RSNA Department of Research. 

An alternative course is the Writing a Competitive Grant Proposal Workshop organized by the Radiological Society of North America. This course is run by leading researchers with extensive experience in all aspects of grant applications and funding. Participants will be provided with valuable tools necessary for actively pursuing federal funding. This intermediate grant writing program is intended for junior faculty and researchers in radiology, radiation oncology, nuclear medicine, and imaging sciences.

https://www.rsna.org/education/workshops/writing-a-competitive-grant-proposal

The T32 program also recommends the National Institute of Health (NIH) Regional Seminars on Program Funding and Grants Administration workshop sponsored by the US Department of Health and Human Services (HHS), Office of Extramural Research. The NIH Regional Seminar involves approximately 35 NIH and HHS staff who are brought to a central location in order to educate, share, and listen to attendees over the course of two days. This seminar is an excellent opportunity for our T32 fellows to make direct contact with NIH policy officials, grants management, program and review staff, eRA Commons experts, as well as representatives from the Office for Human Research Protections (OHRP), and Office of Research Integrity (ORI). This seminar targets new and early stage investigators, researchers, graduate students, and anyone interested in the grants administration process and offers important networking opportunities for our T32 fellows.

https://grants.nih.gov/news/contact-in-person/seminars.htm

coursework.pngThis course is a second course in statistics that supplements the preliminary course taken as part of the Summer Clinical Research Workshop. The advanced course covers multi-predictor methods, including exploratory data analysis, multiple regression (linear and logistic), survival analysis and repeated measures analysis. Emphasis is the practical and proper use of statistical methodology and its interpretation. At the end of the course, students will be able to describe the roles of descriptive versus inferential statistics, identify characteristics of the problem to help choose the appropriate analytic technique, describe techniques appropriate for handling a single outcome variable and multiple predictors, and outline data limitations and their consequences.

Samples of potential project specific courses at UCSF that could be selected by trainees, in conjunction with their research preceptors, are detailed below. These courses have been chosen to illustrate the extensive course options available at UCSF, but this listing is not intended to be necessarily a complete or comprehensive listing; the number, range, and continual evolution of courses available at UCSF precludes formulating a final or all-encompassing list. The courses are offered by the Department of Bioengineering, the Department of Epidemiology and Biostatistics, and the Biomedical Sciences Graduate Program. The Biomedical Sciences Graduate Program is geared towards training students to become basic researchers that study biomedical problems. Course material begins at the molecular and cellular level and then moves to higher levels of organization into tissues and organs. At each stage, relevant disease states and models are discussed. Coursework will be selected by trainees, in consultation with their preceptors, as appropriate to their individual educational needs and research track. Other appropriate postdoctoral or postgraduate courses may also be selected, if they facilitate training in the clinical or research aspects of the projects chosen by trainees. Such additional coursework will be selected by consultation between the trainee, their mentor and their preceptor team and is subject to approval by the Program Director. UCSF provides a detailed catalog on available courses, which may be suitable for the T32 trainee’s project. 

Biomedical Imaging 

Course Number Title Instructor
200 Professionalism in the Academic Medical Center Dr. Saloner
201 Principles of Magnetic Resonance Imaging Drs. Larson
202 Physical Principles of CT, PET, and SPECT Imaging Drs. Seo
203 Imaging Probes for Nuclear and Optical Imaging Drs. VanBrocklin
204 Principles of Diagnostic and Therapeutic Ultrasound  Dr. Saloner 
205 Imaging Study Design  Dr. Hylton
209 Imaging Laboratory MR, CT, PET, & SPECT Drs. Seo/Martin
211 MR Pulse Sequences Dr. Krug
220 Advanced Neurological Imaging  Dr. Lupo Palladino 
230 Cardiovascular Imaging Dr. Saloner
240 Musculoskeletal Imaging  Dr. Kazakia 
260 Image Processing and Analysis I Dr. Tosun-Turgut
265 Image Processing and Analysis II Dr. Noworolski
270 Cancer Imaging Dr. Evans

Bioengineering

Course Title Instructor
221 Tissue Mechanobiology Dr. Lotz
230C Introduction to Molecular Imaging Drs. VanBrocklin/ Seo
241 Metabolism and Magnetic Resonance Spectroscopy   Drs. Kurhanewicz/ Vigneron  
242 Principles of Tissue Engineering Drs. Desai/ Lotz
245 Machine Learning Algorithms for Medical Imaging  Drs. Nagarajan/Pedoia
247 Introduction to MRI Systems & Hardware Dr. Zhang

Cellular and Molecular Engineering

Course Title Instructor
Biochem 112 Human Metabolism Dr. Fulton
Biochem 200A Structure of Macromolecules Dr. Narlikar
Biochem 201A Biological Regulatory Mechanisms Dr. Li
Biomed Sci 230 Advanced Topics in Cancer Research Dr. Bivona
Biomed Sci 255 Basic Genetics and Genomics Drs. Vaisse, Sil
Biomed Sci 260 Cell Biology Dr. Roose/Al-Sady
Biophys 204 Macromolecular Structure and Interactions Dr. Gross/Fraser
BMI 203 Biocomputing Algorithms Dr. Sali
BMI 206 Statistical Methods for Bioinformatics Dr. Pollard
BMI 220 Informatics Seminar Dr. Kortemme
BMI 223 Critical Topics in Biomedical Informatics Dr. Shoichet
Genetics 200A Principles of Genetics Dr. Toczyski

Complex Neural and Biological Systems

Course Title Instructor
Neurosci 200 Introduction to Neuroscience. Essential Concepts & Methods   Dr. Sohal
Neurosci 201A Basic Concepts in Cellular and Molecular Neuroscience Dr. Bender et al
Neurosci 201B Basic Concepts in Developmental & Systems Neuroscience Dr. Chan
Neurosci 248 Analysis of Neural and Behavioral Data Dr. Frank

Pharmacogenomics

Course Title Instructor
Pharmgenom 245A Basic Principles of Pharmaceutical Sciences Dr. Giacomini
Pharmgenom 245B Systems Pharmacology  Dr. Savic
Pharmgenom 245C Principles of Pharmacogenomics Dr. Ahituv
Pharmgenom 271 Advanced Pharmacokinetics in Clinical Drug Development Dr. Benet

Courses offered by the UCSF Department of Epidemiology and Biostatistics

Course Title Instructor
Epi 150.03 Designing Clinical Research for Residents and Students Dr. Huang
Epi 201 Responsible Conduct of Research Dr. Ho/Harris-Wai
Epi 202 Designing Clinical Research Dr. Pletcher
Epi 203 Epidemiologic Methods Dr. Martin  
Epi 204 Clinical Epidemiology Dr. Kohn
Epi 205 Clinical Trials Dr. Black
Epi 207 Epidemiologic Methods Drs. Chan/Witte
Epi 212 Publishing Medical Research Dr. Martin 
Epi 218 Data Management for Clinical Research Dr. Kohn
Epi 243 Human Centered Design Dr. Boscardin
Epi 246 Translating Evidence into Practice Drs. Handley/Lyles
Epi 249 Translating Evidence into Policy Drs. Hollister  
Epi 258 Grant Writing Workshop Drs. Hahn/Woolf-King
Biostat 187 Introduction to Statistical Theory & Practice Dr. Paul
Biostat 192 Introduction to Linear Models Dr. Paul
Biostat 200 Biostatistical Methods in Clinical Research I Dr. Allen
Biostat 202 Opportunities and challenges of complex biomedical data Dr. Glidden
Biostat 208 Biostatistical Methods II Dr. Shiboski
Biostat 209 Biostatistical Methods III Dr. Huang
Biostat 210 Biostatistical Methods IV Dr. Glidden
Biostat 212 Introduction to Statistical Computing in Clinical Research Dr. Pletcher
Biostat 216 Machine Learning in R for the Biomedical Sciences Drs. Kornak/Segal
Biostat 226 Biostatistical Methods V Dr. Hilton
Biostat 273 Introduction to Biostatistics   Dr. Quigley

workshop.pngThis intensive 6 day workshop will train radiology, radiation oncology, and nuclear medicine faculty, fellows, and residents past their 3rd year in the development of protocols for the clinical evaluations of imaging modalities. The participant will undergo a competitive application and selection process, advance preparation, didactic sessions, one-on-one mentoring, small discussion sessions, self study, and protocol synthesis process. Topics covered during the course will include principles of clinical study design, statistical methods for imaging studies, design and conduct of multi-institutional studies, and regulatory processes. Each workshop trainee will be expected to develop a protocol for a clinical study, ready for inclusion in a grant application for external funding.

https://www.rsna.org/education/workshops/clinical-trials-methodology-workshop

One of the major goals of the Clinical & Translational Science Institute (CTSI) is to enhance clinical and translational research training broadly at all levels at UCSF. The program coordinates numerous didactic courses that have trained more than 700 fellows and junior faculty over the past 5 years, and have recently expanded to provide offerings for health science students and residents as well. CTSI also oversees a growing set of career development and mentoring activities, and serves as a clearinghouse that provides information on training activities and resources at UCSF and beyond (Visit the CTSI website for current seminars, workshops, and events).

A 10-session Scientific Writing Course for Clinical and Translational Researchers is being offered at the Mt. Zion campus, Wednesdays from March 7- May 16, 4-5:45 pm. Only 15 participants can be accepted, and the course fills quickly. The course is intended for faculty and postdoctoral basic science or clinical fellows who wish to learn specific ways to marshal the details of a biomedical research paper or grant proposal into a clear, concise, and comprehensible story that will be understandable to an interdisciplinary readership (papers), or meet the agency's review criteria (proposals). Coursework includes didactic presentations and significant writing and revising. Homework is expected to require up to 1 1/2 hours per class meeting.   The enrollment deadline is Friday, February 24.  The fee is $400. 

For more information see https://surgerysciencepubs.ucsf.edu/scientific-writing-course.aspx.  To register, please contact the course instructor, Pamela Derish, Scientific Publications Manager in the Department of Surgery (415) 885-7686.

Matthew Barkovich, MD

T32 Fellow 2017-2018

Current UCSF Radiology Faculty